I believe the post titled "Replacing Front Door Lock Actuator" addresses your question, under the "Body" heading of the W220 S-Class Encyclopedia I referred you to.
One problem we may be having is that I don't really understand the latest problem, from your description, or what it is you are trying to accomplish. My understanding is that your door lock pin on the upper part of the door has gotten pulled into the door. If you remove the door panel, per the video I referred you to, you should be able to put the lock back in place.
If you need to remove and replace the entire mechanism, the references provided should help you. The post titled Replacing the Front Door Lock Actuator discusses your problem, as I understand it, beginning with post #22 - and it does discuss removal of the window tracks. Your earlier posts from 2010 show you're pretty familiar with the mechanism.
If, on the other hand you want to disable the soft close mechanism, I suggest you disconnect the vacuum lines to it, and plug them. If you disconnect them and leave them open you will eventually burn out your PSE pump.