You forgot brittle exhaust manifold inner layer, which usually is destroying turbo. Oh I wish someone would start making welded manifolds in series...
AFAIK is usually turbo actuator which fails (not saying cooling issues wouldn't be a problem), however oil quality and age is really important like Deplore says. In my opinion its not parts fault is stupid people heavily misuse and treat it badly. Everything can be broken, if wanted.
Swirl flap failure is usually actuator motor, which is caused by turbo ^^^^ oil leak.
DEF/nox problems are not engine related, all cars which are fitted with that planet saver, are saving dealers profit only.
I remember lately reading one 'new' oil cooler seal failure.
Black death is something I can't understand, why MB has not changed injector fastening system. It has now been on field nearly 25 years... so its problem of ALL MB diesel engines too.
Timing chain is pretty weird, I can't remember reading any fatal OM642 engine failures caused by overstretched chain or broken tensioner (like some M271 or OM651 engines), even there has been several pictures which proves that timing can be off several degrees, and tensioner parts have been fallen on floor when tensioner pulled out.