You won't like the answer...
You have to break down the system again. I ran into the same thing when I did mine, so I took the center console out, grabbed a compressed air can, and cleaned each of the new connections I just put in from the can bus and VSS, etc... then insure each connection is firm, but careful not to force any connections. Just be sure they're plugged all the way in. It sounds like to me that your conneciton to the VSS is spotty or not happening...
You have to break down the system again. I ran into the same thing when I did mine, so I took the center console out, grabbed a compressed air can, and cleaned each of the new connections I just put in from the can bus and VSS, etc... then insure each connection is firm, but careful not to force any connections. Just be sure they're plugged all the way in. It sounds like to me that your conneciton to the VSS is spotty or not happening...